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Table 3 Runtime of SSR_VibraProfiler on the Rhoddendron dataset

From: SSR_VibraProfiler: a Python package for accurate classification of varieties using SSRs with intra-variety specificity and inter-variety polymorphism

Platform

Intel(R) Core (TM) i9-14900 K 32 Cores 128GB Memory (deployed on the workstation)

Intel(R) Xeon(R) Gold 5318Y CPU 96 cores 2 TB Memory (deployed on the server)

Model Build Command

SSR_VibraProfiler_model_build.py -i index.txt -s 1 -e 3 -pp 0.375 -index index.txt -o output_dir/ -miniap 4 -miniac 6 -misap 24

SSR_VibraProfiler_model_build.py -i index.txt -s 1 -e 3 -pp 0.375 -index index.txt -o output_dir/ -miniap 8 -miniac 5 -misap 40

Cores Used

24

40

Minia Assembly time

9h8m55s

7h27m11s

MISA Running time

15m27s

32m45s

Model Building time

8s

30s

Cross Validation time

5m26s

24m2s

Dimensionality Evaluation time

27s

6m1s